PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000239214
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 435aa    MW: 48149.2 Da    PI: 8.1463
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000239214genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031148170123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C+ C++ Fs++  L  H++ H
  MDP0000239214 148 FTCNFCKRDFSTSQALGGHQNAH 170
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.56E-6145175No hitNo description
Gene3DG3DSA:3.30.160.605.8E-4146174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.448148175IPR007087Zinc finger, C2H2
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
PfamPF141112.1E-12323432IPR025558Domain of unknown function DUF4283
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MAEEYQSPFE ASNISVASDG TPPPKKDSPP PLPPPDLPDQ KMKMKMKEKV IIDDSDDEQP  60
KPKQPSPAVG SSLSPTQNSR HLLDPKLSNN DPGHVSGALS SKELVLFNPL NQGSSSNLGG  120
LGLLSQRNEP RDENPRGDDG KKPQSRVFTC NFCKRDFSTS QALGGHQNAH KQERALAKRR  180
QGGLGMDHNL FGHSHPYYSP YSSITQHPLY GSYGRSLGIR MDSMIHKPSY PWSSXTSGFG  240
RFGHGVGSGG WSSSRPGXLM NNFQSSIDRL NLDGLHANTT SSGTLGLPGT ISASRFDQEI  300
GSARNFGGSN FGINRPIIGG DVLGEXLTEK TVNAEVFIDR FMFLWRGKEG VSIRDLGDRX  360
FLIRFVAKWD MHRVLESEFP WTFKEDFVMV RDCTNMHDEW WQKLSMGAMW VQIHKVPPLS  420
MMAAVAMEIG GKLEW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008344560.10.0PREDICTED: uncharacterized protein LOC103407407
TrEMBLM5X4481e-97M5X448_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-16zinc-finger protein 1